Could you add those options on right click context menu
Minimize to tray - will hide window to tray
Stay on top - wll always show window on top of thers
It's already suggested...
I think it would be better to add such features to Advanced optioins, for both Mouse and Keyboard shortcuts.
There are programs that also letting you do such things by actions on Window Items. For Example:
Direct Folders lets you to Right Click on Close button (X button of a window) to make a window "Always on Top".
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